coordinating atom - PMC

Yi Shi, Zhi-Rui Ma, Yi-Ying Xiao, Yun-Chao Yin, Wen-Mao Huang, Zhi-Chao Huang, Yun-Zhe Zheng, Fang-Ya Mu, Rong Huang, Guo-Yue Shi, Yi-Yang Sun, Xing-Hua Xia, Wei Chen

Nat Commun. 2021; 12: 3021. Published online 2021 May 21. doi: 10.1038/s41467-021-23306-6

PMCID:: PMC8140142

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Emerging single-atom catalysts in the detection and purification of contaminated gases

Lingyue Liu, Ka-Fu Yung, Hongbin Yang, Bin Liu

Chem Sci. 2024 May 1; 15(17): 6285–6313. Published online 2024 Apr 2. doi: 10.1039/d4sc01030b

PMCID:: PMC11062113

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Challenges and Opportunities in Engineering the Electronic Structure of Single-Atom Catalysts

Vera Giulimondi, Sharon Mitchell, Javier Pérez-Ramírez

ACS Catal. 2023 Mar 3; 13(5): 2981–2997. Published online 2023 Feb 14. doi: 10.1021/acscatal.2c05992

PMCID:: PMC9990067

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Photoinduced Organocatalyzed Atom Transfer Radical Polymerization (O-ATRP): Precision Polymer Synthesis Using Organic Photoredox Catalysis

Daniel A. Corbin, Garret M. Miyake

Chem Rev. Author manuscript; available in PMC 2023 Jan 5.

Published in final edited form as: Chem Rev. 2022 Jan 26; 122(2): 1830–1874. Published online 2021 Nov 29. doi: 10.1021/acs.chemrev.1c00603

PMCID:: PMC9815475

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Toward Multicomponent Single-Atom Catalysis for Efficient Electrochemical Energy Conversion

Jaehyun Kim, Sungkyun Choi, Jinhyuk Cho, Soo Young Kim, Ho Won Jang

ACS Mater Au. 2022 Jan 12; 2(1): 1–20. Published online 2021 Oct 25. doi: 10.1021/acsmaterialsau.1c00041

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Modulating the Structure and Composition of Single‐Atom Electrocatalysts for CO₂ reduction

Weiren Chen, Xixiong Jin, Lingxia Zhang, Lianzhou Wang, Jianlin Shi

Adv Sci (Weinh) 2024 Mar; 11(9): 2304424. Published online 2023 Dec 3. doi: 10.1002/advs.202304424

PMCID:: PMC10916602

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Homogeneity of Supported Single‐Atom Active Sites Boosting the Selective Catalytic Transformations

Yujie Shi, Yuwei Zhou, Yang Lou, Zupeng Chen, Haifeng Xiong, Yongfa Zhu

Adv Sci (Weinh) 2022 Aug; 9(24): 2201520. Published online 2022 Jul 9. doi: 10.1002/advs.202201520

PMCID:: PMC9404403

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A molecular view of single-atom catalysis toward carbon dioxide conversion

Xin Shang, Xiaofeng Yang, Guodong Liu, Tianyu Zhang, Xiong Su

Chem Sci. 2024 Mar 27; 15(13): 4631–4708. Published online 2024 Feb 9. doi: 10.1039/d3sc06863c

PMCID:: PMC10966967

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Computational Screening of Single and Di-Atom Catalysts for Electrochemical CO₂ Reduction

Naiwrit Karmodak, Sudarshan Vijay, Georg Kastlunger, Karen Chan

ACS Catal. 2022 May 6; 12(9): 4818–4824. Published online 2022 Apr 7. doi: 10.1021/acscatal.1c05750

PMCID:: PMC10057768

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Recent progresses on single-atom catalysts for the removal of air pollutants

Yang Wang, Min Wang

Front Chem. 2022; 10: 1039874. Published online 2022 Oct 28. doi: 10.3389/fchem.2022.1039874

PMCID:: PMC9650550

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Single-Atom Photocatalysts for Emerging Reactions

Bingquan Xia, Yanzhao Zhang, Jingrun Ran, Mietek Jaroniec, Shi-Zhang Qiao

ACS Cent Sci. 2021 Jan 27; 7(1): 39–54. Published online 2021 Jan 12. doi: 10.1021/acscentsci.0c01466

PMCID:: PMC7844854

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Atomic‐Level Interface Engineering for Boosting Oxygen Electrocatalysis Performance of Single‐Atom Catalysts: From Metal Active Center to the First Coordination Sphere

Qizheng An, Shuowen Bo, Jingjing Jiang, Chen Gong, Hui Su, Weiren Cheng, Qinghua Liu

Adv Sci (Weinh) 2023 Feb; 10(4): 2205031. Published online 2022 Nov 23. doi: 10.1002/advs.202205031

PMCID:: PMC9896066

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PMC Images search for coordinating atom

Fig 1Atom preferences in nickel coordination.

Figure represents a) the various atom types coordinating with the Nickel and b) shows the interactions distances of atoms with the metal.

Ab Initio Coordination Chemistry for Nickel Chelation Motifs

PLoS One. 2015;10(5):e0126787.
FIGURE 3.

Residue Glu-130 exhibits flexible coordination to site B and site C iron. A, monomer A of PmFTN soaked in iron for 4 h. Glu-130 is coordinating to site C and may also interact with the site B iron atom. B, monomer B of PmFTN soaked in iron overnight. Glu-130 is coordinating to site B and may also interact with the site C iron atom. C, monomer C of PmFTN soaked in zinc for 1 h. Glu-130 is coordinating to the site B iron or site C iron atom. Molecular representations and the color scheme are the same as in . Bond lengths are in Å.

Mechanism of Ferrous Iron Binding and Oxidation by Ferritin from a Pennate Diatom

J Biol Chem. 2013 May 24;288(21):14917-14925.
Figure 2Substrate docking of GoSLDH and PfMDH with NAD(P)+ and D-sorbitol.

(A) Distance between the Lys294 (N atom) and D-sorbitol (H atom) in GoSLDH. (B) Distance between the Lys295 (N atom) and D-sorbitol (H atom) in PfMDH. All other atoms are colored according to standard coloring. Amino acid residues are shown by the tube model, whereas bound D-sorbitol is represented by the ball-and-stick model. Active-site coordinating bond lengths are shown in Å. Images were generated using Maestro 10.2.

A highly efficient sorbitol dehydrogenase from Gluconobacter oxydans G624 and improvement of its stability through immobilization

Sci Rep. 2016;6:33438.
Fig. 1.

Halide-binding sites in proteins. Distribution of (A) distances between halide and coordinating atoms, (B) angles between two vectors (halide-nearest-coordinating atom, halide-coordinating atom) and (C) fractional ASA values

Census of halide-binding sites in protein structures

Bioinformatics. 2020 May 15;36(10):3064-3071.